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  • microRNA sequencing analysis pipeline?

    Hi all,

    I am going to analyze the microRNA sequencing data (one control group, one cancer group) but I do not have much experience specifically on miRNA data. We only need to map the reads properly and do not need to detect novel miRNAs at this stage.

    I know that miRNAkey or miRanalyzer might be good choices. Does any have suggestions of better tools? Recently published papers on that are also welcome.

    Thanks.

  • #2
    MicroRNAs from SOLiD machines

    Hi,

    If you have color-space sequences (SOLiD output) you may find interesting our last paper on the topic. You can use our pipeline to map reads to miRNA sequences downloaded from miRBase. We include a detailed README file with the program.





    Do not hesitate to contact me for any question about it.
    Cheers,
    Toni

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