I am using TopHat for some analyses. The program requires the expected mean of the inner distances of the paired reads as a parameter.
However, why does the program need the expected mean inner distance? How does it use this information?
I could not find this information in the online manual.
Thanks.
However, why does the program need the expected mean inner distance? How does it use this information?
I could not find this information in the online manual.
Thanks.
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