hello all,
I've been trying to use sitepro on cistrome but unfortunately, I can't use my bigwig files (they specifically ask for only wig files). I don;t want to convert the bigwigs into wigs because I'd loose info on the data (if I understand this correctly!). Does anyone know of another tool that I could use with bigwigs?
in case of, here's what I want to do:
I have a bed file with only 20 or so regions. I am downloading from encode bigwig files of ChIP-seq on histones and transcription factors. I just want to see the profile of the ChIP-seq on the regions I m interested in (BED file). And of course, I want it to look good for the paper, otherwise I ll just do a screenshot of the genome browser for the 20ish regions...
Any ideas?!
Thank you very much
Rita
I've been trying to use sitepro on cistrome but unfortunately, I can't use my bigwig files (they specifically ask for only wig files). I don;t want to convert the bigwigs into wigs because I'd loose info on the data (if I understand this correctly!). Does anyone know of another tool that I could use with bigwigs?
in case of, here's what I want to do:
I have a bed file with only 20 or so regions. I am downloading from encode bigwig files of ChIP-seq on histones and transcription factors. I just want to see the profile of the ChIP-seq on the regions I m interested in (BED file). And of course, I want it to look good for the paper, otherwise I ll just do a screenshot of the genome browser for the 20ish regions...
Any ideas?!
Thank you very much
Rita
