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  • dkrtndhkd
    Member
    • Jan 2012
    • 42

    #1

    error installing GATK

    hi, i have a problem installing GATK.

    procedure:

    1. go to GATK site and install prerequisite program.

    2. go to the following site:

    http://www.broadinstitute.org/gsa/wi...ading_the_GATK

    and go and do straight step#2.
    1 Getting a Pre-Built Version
    1.1 Within the Broad Institute
    1.2 Outside the Broad Institute
    -> 2 Building the GATK from source <-
    3 Checking out a specific version of the GATK source
    3.1 Using a version number to check out a specific version of the GATK source
    3.2 Using a commit ID to check out a specific version of the GATK source
    4 Signing up for email notifications whenever there's a new GATK release
    5 Supplemental Files

    As i know, step#1 is downloading the GATK program and installing it
    and step#2 is installing GATK program throught git hub.
    so, if i choose step#2, i don't need step#1 process right??

    with this strategy, i installed GATK, there was an error message at the end:
    (after input command line : cd destination_directory/ant)

    BUILD FAILED
    /home/sheun/gatk/build.xml:323: Compile failed; see the compiler error output for details.

    what am i doing wrong?

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