Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • dkrtndhkd
    Member
    • Jan 2012
    • 42

    #1

    error installing GATK

    hi, i have a problem installing GATK.

    procedure:

    1. go to GATK site and install prerequisite program.

    2. go to the following site:

    http://www.broadinstitute.org/gsa/wi...ading_the_GATK

    and go and do straight step#2.
    1 Getting a Pre-Built Version
    1.1 Within the Broad Institute
    1.2 Outside the Broad Institute
    -> 2 Building the GATK from source <-
    3 Checking out a specific version of the GATK source
    3.1 Using a version number to check out a specific version of the GATK source
    3.2 Using a commit ID to check out a specific version of the GATK source
    4 Signing up for email notifications whenever there's a new GATK release
    5 Supplemental Files

    As i know, step#1 is downloading the GATK program and installing it
    and step#2 is installing GATK program throught git hub.
    so, if i choose step#2, i don't need step#1 process right??

    with this strategy, i installed GATK, there was an error message at the end:
    (after input command line : cd destination_directory/ant)

    BUILD FAILED
    /home/sheun/gatk/build.xml:323: Compile failed; see the compiler error output for details.

    what am i doing wrong?

Latest Articles

Collapse

  • SEQadmin2
    Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
    by SEQadmin2



    Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

    Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
    ...
    10-14-2026, 09:55 AM
  • SEQadmin2
    New Genomics Technologies Take Aim at Long-Standing Limits
    by SEQadmin2


    Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

    We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
    ...
    09-28-2026, 10:25 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, 10-22-2026, 11:13 AM
0 responses
24 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-22-2026, 10:48 AM
0 responses
20 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-15-2026, 10:52 AM
0 responses
36 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-14-2026, 05:39 AM
0 responses
42 views
0 reactions
Last Post SEQadmin2  
Working...