When annotating a eukaryotic genome de novo, I find it tricky to identify gene models that in reality are two genes that are incorrectly fused. Rather than correctly identifying the stop codon, the gene finder adds an intron and continues the gene model into what really is a neighboring gene. I was just wondering what you do to identify these incorrectly fused gene models. Blasting all gene models is probably the obvious start, but then how to fish out the incorrectly fused ones and visualize the results? Are there any available tools that does this?
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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