Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • qingdaoalbert
    Junior Member
    • Feb 2012
    • 4

    #1

    errors during installing mira on suse 10

    I’m trying to comply mira 3.4.1 on a cluster computer with suse 10 Linux system. We’ve upgraded boost and flex to the latest version before complying. Since I do not have the administrator authority, necessary libs were installed under $Home/bin.
    The locations of the newly-installed libs were informed using option switches as listed below: “./configure --prefix=/public/home/zhaozengfang/software/mira --with-boost=/public/home/zhaozengfang/software/boost148/ --with-boost-libdir=/public/home/zhaozengfang/software/boost148/lib/ --with-tcmalloc-dir=/public/home/zhaozengfang/software/gperf/lib --enable-64=yes --enable-mirastatic”. It seems OK for this step. The system reported that everything looks good.
    However, during make step, several errors occurred. I failed to install mira on the MPI computer. The error message were given:

    ##########################
    g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"3.4.0.1\" -DPACKAGE_STRING=\"mira\ 3.4.0.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"3.4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DDEVELOPMENTVERSION=0 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -DPUBLICQUIET -DAJ_Linux64 -I/public/home/zhaozengfang/software/mira/include -O3 -funroll-loops -I/public/home/zhaozengfang/software/expat/include -pthread -I/public/home/zhaozengfang/software/boost148//include -MT exp_flexer.o -MD -MP -MF .deps/exp_flexer.Tpo -c -o exp_flexer.o exp_flexer.cc
    exp_flexer.cc:325:25: error: no ?.nt EXPFlexLexer::yywrap()?.member function declared in class ?.XPFlexLexer?
    exp_flexer.cc: In member function ?.irtual int EXPFlexLexer::yylex()?.
    exp_flexer.cc:1313:19: error: ?.ywrap?.was not declared in this scope
    exp_flexer.cc: In member function ?.nt EXPFlexLexer::yyinput()?.
    exp_flexer.cc:1732:20: error: ?.ywrap?.was not declared in this scope
    make[2]: *** [exp_flexer.o] Error 1
    make[2]: Leaving directory `/public/home/zhaozengfang/software/mira-3.4.0.1/src/io'
    make[1]: *** [all-recursive] Error 1
    make[1]: Leaving directory `/public/home/zhaozengfang/software/mira-3.4.0.1/src'
    make: *** [all-recursive] Error 1
    ###########################

    There may be something wrong for flex. I’ve tried my best to fix the problem including add the new libs into environmental variables, but still failed.
    The config.log were attached, I’m grateful if you can give me some help.
    Attached Files
  • sklages
    Senior Member
    • May 2008
    • 628

    #2
    You might want to consult the MIRA mailing list. http://chevreux.org/mira_mailinglists.html


    Comment

    • qingdaoalbert
      Junior Member
      • Feb 2012
      • 4

      #3
      Thanks a lot for the information

      Comment

      • maubp
        Peter (Biopython etc)
        • Jul 2009
        • 1544

        #4
        It would have been nice to cross link your email and this thread:
        http://www.freelists.org/post/mira_t...r-with-suse-10

        Originally posted by qingdaoalbert View Post
        There may be something wrong for flex.
        Yes.

        Comment

        • qingdaoalbert
          Junior Member
          • Feb 2012
          • 4

          #5
          Thanks a lot for the advices, the problem has been resolved following the information from http://www.freelists.org/post/mira_t...my-configlog,7

          Comment

          Latest Articles

          Collapse

          • SEQadmin2
            Beyond CRISPR/Cas9: Understand, Choose, and Use the Right Genome Editing Tool
            by SEQadmin2



            CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.1 But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).

            Despite this, “CRISPR helped turn genome editing from a specialized technique into
            ...
            07-31-2026, 11:01 AM
          • SEQadmin2
            Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications
            by SEQadmin2


            Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

            The systematic characterization of the human proteome has
            ...
            07-20-2026, 11:48 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by SEQadmin2, 08-13-2026, 12:22 PM
          0 responses
          31 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 08-11-2026, 10:35 AM
          0 responses
          24 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 08-06-2026, 07:41 AM
          0 responses
          38 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 08-03-2026, 10:13 AM
          0 responses
          51 views
          0 reactions
          Last Post SEQadmin2  
          Working...