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  • jorge
    replied
    Hi,

    CCAT output is TSV but does not have the same fields as the original BED files used as CCAT input.

    Yes, I guess I'll have to process the CCAT output so the look like BED files.

    Thanks
    Jorge

    Leave a comment:


  • GenoMax
    replied
    What format is your result data in (bed/bam)?

    Depending on the answer you may either be able to visualize the data in UCSC browser directly or would need to do some post-processing (e.g. with bedtools).

    Leave a comment:


  • jorge
    started a topic visualize CCAT peaks in UCSC browser

    visualize CCAT peaks in UCSC browser

    Hello,

    I have obtained a list of significant peaks by running chip-seq data on CCAT. Now my question is:

    How could I load the CCAT output onto the UCSC browser?

    Thanks
    Jorge

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