Galaxy Intersect

[Palgrave]

Hi,

I have downloaded miRNA track from UCSC and whant to intersect this with my bowtie-output by using interect in Galaxy.
I did this but the miRNA-names did not occure in the intersect file.
Can one use intersect this way to get annotations, and how?

[tnabtaf]

This question is better asked on the Galaxy-User mailing list. See http://wiki.g2.bx.psu.edu/Mailing%20Lists.

I'm guessing that you want to intersect based on position (Tools -> Operate on Genomic Intervals, in Galaxy), rather than name (Tools -> Join, Subtract, and Group).

If you have further questions, send them to Galaxy-user.