Hi,
I'm wondering if someone could give me some tips on how to implement this.
I have set up a simple wwwblast search engine with appropriately formated databases for blastn etc.
I also want to implement a feature which allows one to type in a keyword to extract the sequences annotated with this keyword (i.e. gene/feature search), just like what many database sites have. The point is to enable this through a GUI/webpage interface.
My database sequences are already annotated with a simple description in the header.
I don't think www-blast has a feature which does a descriptor search.
Is there a software that does this?
Can I write a 'wrapper' to implement a e.g. grep search, and put it on the www-blast front page or something to that effect - if so how do i go about doing this?
I don't need anything fancy, but just having this functionality would help.
If someone could even just give me some keywords to google, that would help as I don't know where to start at the moment.
Many thanks
I'm wondering if someone could give me some tips on how to implement this.
I have set up a simple wwwblast search engine with appropriately formated databases for blastn etc.
I also want to implement a feature which allows one to type in a keyword to extract the sequences annotated with this keyword (i.e. gene/feature search), just like what many database sites have. The point is to enable this through a GUI/webpage interface.
My database sequences are already annotated with a simple description in the header.
I don't think www-blast has a feature which does a descriptor search.
Is there a software that does this?
Can I write a 'wrapper' to implement a e.g. grep search, and put it on the www-blast front page or something to that effect - if so how do i go about doing this?
I don't need anything fancy, but just having this functionality would help.
If someone could even just give me some keywords to google, that would help as I don't know where to start at the moment.
Many thanks