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So what is the update with this project https://github.com/nh13/samtools . Is it still faster than multi-threaded version of samtools ? Is this going to be a good substitute for Goby and Cram ?
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Has there been any success on mpileup speedup ? Is the parallelization by pthreads or MPI ?Comment
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Is the bcftools that come with samtools also multithreaded ?Comment
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There was no desire from the folks maintaining samtools to take over the development and add it. Sorry for the delayed response.Originally posted by narain View PostComment
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