So what is the update with this project https://github.com/nh13/samtools . Is it still faster than multi-threaded version of samtools ? Is this going to be a good substitute for Goby and Cram ?
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Has there been any success on mpileup speedup ? Is the parallelization by pthreads or MPI ?Comment
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Is the bcftools that come with samtools also multithreaded ?Comment
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There was no desire from the folks maintaining samtools to take over the development and add it. Sorry for the delayed response.Originally posted by narain View PostComment
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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