Hello,
I was looking for a one-stop tool which takes BAM and target capture regions to provide a detailed summary with coverage estimates on-target/off-target regions for exome-seq, but I didn't see any such as of now. (There are tools that generate coverage files such as GATK's depth_of_coverage, BEDtools, but none of them provide *summary* of on/off-target bases/%)
Does anyone have any experience / know any such tools?
Raj
I was looking for a one-stop tool which takes BAM and target capture regions to provide a detailed summary with coverage estimates on-target/off-target regions for exome-seq, but I didn't see any such as of now. (There are tools that generate coverage files such as GATK's depth_of_coverage, BEDtools, but none of them provide *summary* of on/off-target bases/%)
Does anyone have any experience / know any such tools?
Raj
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