I'm trying to compile bowtie for Windows x64 using MinGW64. I actually have a working binary for bowtie x64, but I can only get it to compile with BOWTIE_PTHREADS=0. When that is enabled, I get "Error: incorrect register '%eax' used with 'q' suffix" and make for bowtie fails. Anyone know any solution around this? I'm using pthreads from http://sourceforge.net/apps/trac/min...ile%20pthreads
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I have an operational (with threads) bowtie for Win7-x64 which I could make available if you wish. It comes with the usual disclaimer of warranty. I've run it for about a year with no problems. I will have to locate the notes for compiling though. -
That'd be great if you could provide me with it. If you have compiling notes to share too, that'd be helpful too for future/similar compilations. You wouldn't happen to have a working version of TopHat too?Originally posted by DWW1505 View PostComment
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I will to contact the researcher for whom it was built tonight. Please PM with your contact info as the files will be a bit much for email. TopHat (1.4.1 and 1.3.3), as implemented in my port, requires 64-bit Samtools, 64-bit Bowtie, several supporting files, and does not do .gz compression.Comment
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM
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