Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • lh3
    Senior Member
    • Feb 2008
    • 686

    #1

    Samtools repository moved to github

    From samtools-devel:

    I have set up the official repository at:

    samtools has 16 repositories available. Follow their code on GitHub.


    imported from SVN. The changes from my private github repository have been fully merged to SVN before importing. I will stop making changes to my private github and the subversion at SourceForge, but both will exist for a historical record. The detailed changes in my private github and tags/branches in subversion are not imported. Change logs that are not imported to <https://github.com/samtools> are kept in "ChangeLog.old". Note that only the repository has been moved. The samtools website, file download and the mailing list are still hosted by sourceforge.

    At present, Petr Danecek, a long-time samtools developer, and myself can commit to samtools/samtools and samtools/tabix. Only I can change the spec, but I am happy to add Tim Fennel or Alec as admin. Alec has improved the spec before. As Mark and Richard have argued, changes to the spec will go through discussions and be less open.

    I am aware that moving the official repository will cause troubles to some developers, which is further complicated by my own unofficial fork. I apologize for my mistakes and hope having a single official repository at github will benefit the development in the long run.

    Thanks,

    Heng
  • adaptivegenome
    Super Moderator
    • Nov 2009
    • 436

    #2
    What made you switch? What do you like more about github?

    Comment

    Latest Articles

    Collapse

    • SEQadmin2
      Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
      by SEQadmin2



      Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

      Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
      ...
      10-14-2026, 09:55 AM
    • SEQadmin2
      New Genomics Technologies Take Aim at Long-Standing Limits
      by SEQadmin2


      Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

      We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
      ...
      09-28-2026, 10:25 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 10-22-2026, 11:13 AM
    0 responses
    26 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-22-2026, 10:48 AM
    0 responses
    20 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-15-2026, 10:52 AM
    0 responses
    36 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-14-2026, 05:39 AM
    0 responses
    43 views
    0 reactions
    Last Post SEQadmin2  
    Working...