Hi All,
I am trying to run cuffmege and keep getting this error
cuffmerge -g hg19_refseq.gtf -s hg19_new.fa -p 8 assemblies.txt
[Sun Mar 11 16:26:35 2012] Beginning transcriptome assembly merge
-------------------------------------------
[Sun Mar 11 16:26:35 2012] Preparing output location ./merged_asm/
Traceback (most recent call last):
File "/private/apps/bin/cuffmerge", line 573, in ?
sys.exit(main())
File "/private/apps/bin/cuffmerge", line 543, in main
chrom_info = get_gtf_chrom_info(gtf, chrom_info)
File "/private/apps/bin/cuffmerge", line 476, in get_gtf_chrom_info
left = int(cols[3])
ValueError: invalid literal for int(): 5chr1
Does somebody know why?
Thanks,
Moriah
I am trying to run cuffmege and keep getting this error
cuffmerge -g hg19_refseq.gtf -s hg19_new.fa -p 8 assemblies.txt
[Sun Mar 11 16:26:35 2012] Beginning transcriptome assembly merge
-------------------------------------------
[Sun Mar 11 16:26:35 2012] Preparing output location ./merged_asm/
Traceback (most recent call last):
File "/private/apps/bin/cuffmerge", line 573, in ?
sys.exit(main())
File "/private/apps/bin/cuffmerge", line 543, in main
chrom_info = get_gtf_chrom_info(gtf, chrom_info)
File "/private/apps/bin/cuffmerge", line 476, in get_gtf_chrom_info
left = int(cols[3])
ValueError: invalid literal for int(): 5chr1
Does somebody know why?
Thanks,
Moriah
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