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  • How to use BWA - a newbie's question

    Hi guys,

    I am trying to do alignment with .fq data by using BWA.

    After reading "How-to/exome analysis" I downloaded bwa-0.6.1.tar.bz2 (130.0 kB), unzipped it. However, under the folder, there is no executive file of bwa. The cloest one I can find is bwa.1

    Could anyone help me with this? I am using the bash terminal in OpenSUSE. Do I need to install BWA or what?

    Thanks

    E

  • #2
    Got the help from a friend:
    under bwa folder -> make
    to compile the bwa exacutive file, then it is ready to work.

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