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  • mhadidi2002
    Member
    • Jun 2011
    • 24
    #1

    viewing bed files into IGV

    Hello,

    I need to ask, does anyone know how to view bed file using IGV?

    my file is like that:
    #chrom chromStart chromEnd
    chr21 9434178 9434609
    chr21 9434178 9434609
    chr21 9508110 9508214
    chr21 9516607 9516987
    chr21 9903013 9903230
    chr21 9903013 9903230
    chr21 9905661 9906613
    chr21 9907217 9907519
    chr21 9907241 9907415
    chr21 9907597 9908258
    chr21 9983939 9984155

    WhenI tried to open the file by IGV, nothing happens..

    Please let me know if there are any other genome browsers that Ican use.

    Best,
    Tags: None
    • arvid
      Senior Member
      • Jul 2011
      • 156
      #2
      Did you name the file ".bed"? Then IGV should load it. It should add the track at the bottom, below the "Genes" track (if you have one), sometimes you have to scroll down to see it.

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