Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • strepthroat
    replied
    Hi there, I am having a similar problem with my BAM files.

    I have some transcriptome data in BAM format (alongside the BAM sorted and sorted.bai index files made with SAM tools).

    When i read the BAM file nothing happens on my screen.

    Thanks

    Leave a comment:


  • alyamahmoud
    replied
    you need to zip your VCF file first and then index
    bgzip file.vcf
    tabix file.vcf.gz

    Leave a comment:


  • palc
    replied
    problem with vcf file reading on artemis

    I got the same problem..still trying to fix it up

    Leave a comment:


  • lg36
    started a topic Viewing vcf and bam files in artemis

    Viewing vcf and bam files in artemis

    Dear All, I'm new to Artemis and could do with some help viewing vcf files.

    1) First I loaded my embl reference file
    2) Then I index my vcf files with tabix as per the manual
    3) Then I go to File > Read BAM/VCF
    4) Find the file and select it (but nothing seems to happen in the viewer)

    When I click on Display > VCF also nothing happens

    I've even tried using bcftools to index the bcf files and upload them but that doesn't work either.

    What am I doing wrong? I should be able to load various vcf files?

    I'd be really grateful for some guidance on this. Many thanks.

Latest Articles

Collapse

  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    06-06-2024, 07:15 AM
  • seqadmin
    Latest Developments in Precision Medicine
    by seqadmin



    Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

    Somatic Genomics
    “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
    05-24-2024, 01:16 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 06-17-2024, 06:54 AM
0 responses
11 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-14-2024, 07:24 AM
0 responses
22 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-13-2024, 08:58 AM
0 responses
17 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-12-2024, 02:20 PM
0 responses
20 views
0 likes
Last Post seqadmin  
Working...
X