Hi there, I am having a similar problem with my BAM files.
I have some transcriptome data in BAM format (alongside the BAM sorted and sorted.bai index files made with SAM tools).
When i read the BAM file nothing happens on my screen.
Thanks
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you need to zip your VCF file first and then index
bgzip file.vcf
tabix file.vcf.gz
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problem with vcf file reading on artemis
I got the same problem..still trying to fix it up
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Viewing vcf and bam files in artemis
Dear All, I'm new to Artemis and could do with some help viewing vcf files.
1) First I loaded my embl reference file
2) Then I index my vcf files with tabix as per the manual
3) Then I go to File > Read BAM/VCF
4) Find the file and select it (but nothing seems to happen in the viewer)
When I click on Display > VCF also nothing happens
I've even tried using bcftools to index the bcf files and upload them but that doesn't work either.
What am I doing wrong? I should be able to load various vcf files?
I'd be really grateful for some guidance on this. Many thanks.Tags: None
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