Dear all,
I have one sample genome sequence data which mapped into the reference genome, and I have called the SNP with GATK. However, its seems the GATK can only calling the SNP between sample and reference, but I want to calling the SNP among sample. And I try to analyse the result of GATK by using the VarScan, but its failure! Is there any softwares can do this job?
Thanks!
I have one sample genome sequence data which mapped into the reference genome, and I have called the SNP with GATK. However, its seems the GATK can only calling the SNP between sample and reference, but I want to calling the SNP among sample. And I try to analyse the result of GATK by using the VarScan, but its failure! Is there any softwares can do this job?
Thanks!
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