Hello All,
Does GATK use uniquely mapped or reads that satisfy the parameter criteria for calling variants by default? How do I instruct GATK to use only uniquely mapped reads to variant calling?
Any comments or experience on this
Thanks
Raj
Does GATK use uniquely mapped or reads that satisfy the parameter criteria for calling variants by default? How do I instruct GATK to use only uniquely mapped reads to variant calling?
Any comments or experience on this
Thanks
Raj
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