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  • plefebvre
    Member
    • Jan 2010
    • 10
    #1

    Bam to Wig

    Hi bioinformatics wiz
    I am looking for a simple way to convert sam/bam to wig files. Does any one knows of a simple tool I may use for that (please no Unix nor Python command lines!)
    Thanks
    Tags: None
  • DWW1505
    Junior Member
    • May 2011
    • 5
    #2
    Try SAMMate for Windows. http://asammate.sourceforge.net/sammate.html

    Comment

    • plefebvre
      Member
      • Jan 2010
      • 10
      #3
      Worked nicely, until

      17:57:40 <INFO> The total count of short reads mapped on exons is : 197807
      17:57:40 <INFO> Parsing BAM file is complete.
      17:57:40 <INFO> Start building coverage file in the wiggle format.
      17:57:42 <WARN> The process is cancelled.

      This happened for several bam files. Any idea ?
      Thanks again

      Comment

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