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  • plefebvre
    Member
    • Jan 2010
    • 10
    #1

    Bam to Wig

    Hi bioinformatics wiz
    I am looking for a simple way to convert sam/bam to wig files. Does any one knows of a simple tool I may use for that (please no Unix nor Python command lines!)
    Thanks
    Tags: None
    • DWW1505
      Junior Member
      • May 2011
      • 5
      #2
      Try SAMMate for Windows. http://asammate.sourceforge.net/sammate.html

        Comment

        • plefebvre
          Member
          • Jan 2010
          • 10
          #3
          Worked nicely, until

          17:57:40 <INFO> The total count of short reads mapped on exons is : 197807
          17:57:40 <INFO> Parsing BAM file is complete.
          17:57:40 <INFO> Start building coverage file in the wiggle format.
          17:57:42 <WARN> The process is cancelled.

          This happened for several bam files. Any idea ?
          Thanks again

            Comment

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