Hi all,
How did you build and install trimmomatic? There is no make file so I am not sure how to run the software. Anyone?
How did you build and install trimmomatic? There is no make file so I am not sure how to run the software. Anyone?
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ADAPTER=TruSeq3 ORIENTATION=PE #or SE java -jar /data5/Programs/Trimmomatic-0.30/trimmomatic-0.30.jar $ORIENTATION -threads 4 -phred33 $1 $2 $1.1P_$ADAPTER.fastq $1.1U_$ADAPTER.fastq $2.2P_$ADAPTER.fastq $2.2U_$ADAPTER.fastq ILLUMINACLIP:/data5/Programs/Trimmomatic-0.30/adapters/$ADAPTER\-$ORIENTATION.fa:2:30:10 LEADING:30 TRAILING:30 SLIDINGWINDOW:4:15 MINLEN:36
$ mkdir /Users/tinaneik/src
$ mkdir ~/src
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