Dear HTSeq expert(s)
I am installing HTSeq as root user on OS: Mac OS X (snow leopard).
I downloaded the tarbal from
Here is the output of the install and build command:
Can you please help sort the problem. What is "setuptools" seeking or how does one run that first.
Thanks in advance
Best,
sarosh
I am installing HTSeq as root user on OS: Mac OS X (snow leopard).
I downloaded the tarbal from
Here is the output of the install and build command:
Code:
sh-3.2# ./clean sh-3.2# ./build_it swig -Wall -c++ -python StepVector.i mv StepVector.py ../HTSeq cython HTSeq/_HTSeq.pyx -o _HTSeq.c make: cython: No such file or directory make: *** [_HTSeq.c] Error 1 Could not import 'setuptools', falling back to 'distutils'. running build running build_py creating build creating build/lib.macosx-10.4-x86_64-2.7 creating build/lib.macosx-10.4-x86_64-2.7/HTSeq copying HTSeq/__init__.py -> build/lib.macosx-10.4-x86_64-2.7/HTSeq copying HTSeq/_HTSeq_internal.py -> build/lib.macosx-10.4-x86_64-2.7/HTSeq copying HTSeq/StepVector.py -> build/lib.macosx-10.4-x86_64-2.7/HTSeq copying HTSeq/_version.py -> build/lib.macosx-10.4-x86_64-2.7/HTSeq creating build/lib.macosx-10.4-x86_64-2.7/HTSeq/scripts copying HTSeq/scripts/__init__.py -> build/lib.macosx-10.4-x86_64-2.7/HTSeq/scripts copying HTSeq/scripts/qa.py -> build/lib.macosx-10.4-x86_64-2.7/HTSeq/scripts copying HTSeq/scripts/count.py -> build/lib.macosx-10.4-x86_64-2.7/HTSeq/scripts running build_ext building 'HTSeq._HTSeq' extension creating build/temp.macosx-10.4-x86_64-2.7 creating build/temp.macosx-10.4-x86_64-2.7/src gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c src/_HTSeq.c -o build/temp.macosx-10.4-x86_64-2.7/src/_HTSeq.o -w gcc: error: src/_HTSeq.c: No such file or directory gcc: fatal error: no input files compilation terminated. error: command 'gcc' failed with exit status 1
Thanks in advance
Best,
sarosh
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