known TF target genes in chipSeq dataset

[honey]

I have a Chip-seq data and has analyzed it to identify differentially enriched peaks (if relavant I used CISTROME uisng MACS peak calling). Also identified the motif. Everything seems to be in place and we were able to confirm few identified targets in downsteram analysis.
The question which I have is- I want to identify the target genes of a specific TF enriched in my Chip-seq data. Is there an easy way of doing it?

Thanks

[tebuffer]

For the TF's that has the chipseq data, try ChEA and hmChIP.

http://amp.pharm.mssm.edu/lib/chea.jsp

http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl

For those TF's without any chipseq data, the only way that is out there for now i guess is to run something like a classical GO analysis for the TF binding sites. But for that i dont remember any servers that let you use the sequence (or its coordinates) as the input.

Good luck
TEB

[mudshark]

might be a good starting point:

http://www.bioconductor.org/packages/2.5/bioc/html/ChIPpeakAnno.html