Hello all,
Just wanted to see about an update for the original question. I too am working with S. aureus and am looking for best practices to reduce false positive SNP calls. Were you able to successfully create a dbSNP file based on the methods described? And if so, how are you filtering your variant calls after creating your VCF?
Thanks!
Just wanted to see about an update for the original question. I too am working with S. aureus and am looking for best practices to reduce false positive SNP calls. Were you able to successfully create a dbSNP file based on the methods described? And if so, how are you filtering your variant calls after creating your VCF?
Thanks!
Comment