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  • tmy1018
    Member
    • Feb 2011
    • 10

    #1

    Publicly available strand-specific RNA-Seq data with corresponding RT-PCR data?

    Hi,

    I'm wondering if there publicly available strand-specific RNA-Seq data with corresponding RT-PCR data?

    I found 2 papers that has the data I need: 1. http://www.plosone.org/article/info%...l.pone.00152711 2. http://genomebiology.com/2010/11/8/R87

    But the problem is that the amount of data is too small. I'm wondering if there are larger data sets available?

    Thanks!
  • dmacmillan
    Member
    • Jan 2012
    • 49

    #2
    I would be interested in finding some strand-specific RNA-Seq data that is publicly available as well!

    Comment

    • jujubix
      Member
      • May 2011
      • 14

      #3
      modENCODE Drosophila (http://www.modencode.org/) has several strand-specific RNA-seq libraries, although I'm not sure they have corresponding RT-PCR data...

      12 strand-specific embryonic total-RNA SOLiD libraries here, 19 strand-specific cell line poly-A+ Illumina libraries here, and the corresponding paper here

      Comment

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