Hi Seqers,
I am trying to convert the SRA ChIP-Seq file (SRA Archive) to Illumina Fastq format. I ran illumina-dump -A <Accession Number> <filename>. I got about more 100 qcal and seq files. Now, I would like to know what should me my input file for ELAND_standalone.pl aligner program.
Do I have to concatenate all my 100 seq files into 1 file and then run ELAND_standalone.pl ?
Any help/hints/suggestions/advice would highly be appreciated.
Thanks.
I am trying to convert the SRA ChIP-Seq file (SRA Archive) to Illumina Fastq format. I ran illumina-dump -A <Accession Number> <filename>. I got about more 100 qcal and seq files. Now, I would like to know what should me my input file for ELAND_standalone.pl aligner program.
Do I have to concatenate all my 100 seq files into 1 file and then run ELAND_standalone.pl ?
Any help/hints/suggestions/advice would highly be appreciated.
Thanks.
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