Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    question related to INDELS

    Hi All,

    I was wondering if there are programs out there that can predict if 6 base pair deletion (INDEL) in the genome is predicted to be deleterious.
    Thanks for your help,
    Tags: None
  • #2
    SIFT might be a program that can help you.

    SIFT - Predict effects of nonsynonmous / missense variants
    http://sift.bii.a-star.edu.sg/
    SIFT, non-synonymous polymorphism, nonsynonymous polymorphisms, Single Nucleotide Polymorphims analysis tool, mutation analysis tool, protein function prediction tool, amino acid substitution effect prediciton tool, human SNPs, human polymorphisms, consequence of amino acid changes, missense mutations, nsSNP, polymorphism, polymorphisms, human genetic variations, human mutagenesis, SNPs analysis tool, genome variant, genomic variation, mutation, coding nonsynonymous variants, effects of amino acid substitutions, affect protein function, deleterious AAS, Deleterious Amino Acid Substitutions, CDS variants, Damaging Amino Acid Substitutions, single nucleotide variants, genome-scale, SIFT predictions, SIFT scores, missense status, in-silico prediction, protein sequence conservation, protein sequence homology, protein homologues, multiple alignment, ng, henikoff, sorting intolerant from tolerant, SNP, bii, gis, bioinformatics, computational biology, SIFT genome tools, single protein tools, protein batch tools, automated prediction tool, algorithm, genotype change, fhcrc, jcvi, Fred Hutchinson Cancer Researcher Center, J. Craig Venter Institute, Genome Institute of Singapore, Bioinformatics Institute

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin




      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
      04-22-2024, 07:01 AM
    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    Expanding the Horizons of Cellular Research with the Single Cell Atlas by seqadmin
    Started by seqadmin, 04-25-2024, 11:49 AM
    0 responses
    20 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-25-2024, 11:49 AM  
    Genetic Variants and Diabetes Risk in Childhood Cancer Survivors by seqadmin
    Started by seqadmin, 04-24-2024, 08:47 AM
    0 responses
    20 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-24-2024, 08:47 AM  
    Cancer Metastasis: A Deep Dive into Cellular Plasticity by seqadmin
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    62 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-11-2024, 12:08 PM  
    Proteogenomic Profiles Offer New Clues in Prostate Cancer by seqadmin
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    61 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-10-2024, 10:19 PM  
    View All
    Working...
    X