Hello Community,
Does anyone have a script or know of a program that is capable of generating a pseudogenome by combining a set of polymorphisms called against a reference genome with the reference genome to generate the new pseudogenome. I am trying to use BRATNextGen to identify points of recombination in a set of bacterial genomes and the program seems to take a fasta file containing the reference genome and the type of pseudogenomes I am describing as an input for detecting regions of recombination. Thanks for any advice and assistance.
S. Beres
Does anyone have a script or know of a program that is capable of generating a pseudogenome by combining a set of polymorphisms called against a reference genome with the reference genome to generate the new pseudogenome. I am trying to use BRATNextGen to identify points of recombination in a set of bacterial genomes and the program seems to take a fasta file containing the reference genome and the type of pseudogenomes I am describing as an input for detecting regions of recombination. Thanks for any advice and assistance.
S. Beres
