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  • sbberes
    Member
    • Jan 2009
    • 22
    #1

    pseudogenome from reference and SNPs

    Hello Community,
    Does anyone have a script or know of a program that is capable of generating a pseudogenome by combining a set of polymorphisms called against a reference genome with the reference genome to generate the new pseudogenome. I am trying to use BRATNextGen to identify points of recombination in a set of bacterial genomes and the program seems to take a fasta file containing the reference genome and the type of pseudogenomes I am describing as an input for detecting regions of recombination. Thanks for any advice and assistance.
    S. Beres
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