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  • About SOLiD's corona

    Hi,guys.
    I'm working with SOLiD sequence mapping recently.
    I used to use bowtie to do the mapping. But now I want to use corona.
    But it comes with so many problems when I carry out the installation on my pc:x86_64 GNU/Linux.
    Here is the information

    [email protected][corona_Lite_4.2.2] make install PREFIX=/home/lane/app/test/
    make -C pairing install PREFIX=/home/lane/app/test/
    make[1]: Entering directory `/home/lane/app/corona_Lite_4.2.2/pairing'
    ************* Building perl...
    make -C perl
    make[2]: Entering directory `/home/lane/app/corona_Lite_4.2.2/pairing/perl'
    make[2]: *** No rule to make target `/usr/lib64/perl5/5.10.0/x86_64-linux-thread-multi/Config.pm', needed by `Makefile'. Stop.
    make[2]: Leaving directory `/home/lane/app/corona_Lite_4.2.2/pairing/perl'
    make[1]: *** [perl] Error 2
    make[1]: Leaving directory `/home/lane/app/corona_Lite_4.2.2/pairing'
    make: *** [pairing-install] Error 2

    Why does this happen?
    I'm a green hand with linux.
    Thanks a lot!
    Last edited by gigigou; 05-16-2012, 12:27 AM.

  • #2
    Corona is old, forget it! Superseded by Bioscope then Lifescope.

    Have a look at the SOLiD application forum on this site for aligner discussions, but you could try NovoalignCS (commercial) or Shrimp2 (free).

    Comment


    • #3
      old?
      I'm just beginning with it, then it is said to be old...
      I'll try the Shrimp.
      But still wish somebody can help me with corona.
      Originally posted by colindaven View Post
      Corona is old, forget it! Superseded by Bioscope then Lifescope.

      Have a look at the SOLiD application forum on this site for aligner discussions, but you could try NovoalignCS (commercial) or Shrimp2 (free).
      Last edited by gigigou; 05-16-2012, 04:58 PM.

      Comment

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