Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • About SOLiD's corona

    Hi,guys.
    I'm working with SOLiD sequence mapping recently.
    I used to use bowtie to do the mapping. But now I want to use corona.
    But it comes with so many problems when I carry out the installation on my pc:x86_64 GNU/Linux.
    Here is the information

    lane@lane-desktop[corona_Lite_4.2.2] make install PREFIX=/home/lane/app/test/
    make -C pairing install PREFIX=/home/lane/app/test/
    make[1]: Entering directory `/home/lane/app/corona_Lite_4.2.2/pairing'
    ************* Building perl...
    make -C perl
    make[2]: Entering directory `/home/lane/app/corona_Lite_4.2.2/pairing/perl'
    make[2]: *** No rule to make target `/usr/lib64/perl5/5.10.0/x86_64-linux-thread-multi/Config.pm', needed by `Makefile'. Stop.
    make[2]: Leaving directory `/home/lane/app/corona_Lite_4.2.2/pairing/perl'
    make[1]: *** [perl] Error 2
    make[1]: Leaving directory `/home/lane/app/corona_Lite_4.2.2/pairing'
    make: *** [pairing-install] Error 2

    Why does this happen?
    I'm a green hand with linux.
    Thanks a lot!
    Last edited by gigigou; 05-16-2012, 12:27 AM.

  • #2
    Corona is old, forget it! Superseded by Bioscope then Lifescope.

    Have a look at the SOLiD application forum on this site for aligner discussions, but you could try NovoalignCS (commercial) or Shrimp2 (free).

    Comment


    • #3
      old?
      I'm just beginning with it, then it is said to be old...
      I'll try the Shrimp.
      But still wish somebody can help me with corona.
      Originally posted by colindaven View Post
      Corona is old, forget it! Superseded by Bioscope then Lifescope.

      Have a look at the SOLiD application forum on this site for aligner discussions, but you could try NovoalignCS (commercial) or Shrimp2 (free).
      Last edited by gigigou; 05-16-2012, 04:58 PM.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Exploring the Dynamics of the Tumor Microenvironment
        by seqadmin




        The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...
        07-08-2024, 03:19 PM
      • seqadmin
        Exploring Human Diversity Through Large-Scale Omics
        by seqadmin


        In 2003, researchers from the Human Genome Project (HGP) announced the most comprehensive genome to date1. Although the genome wasn’t fully completed until nearly 20 years later2, numerous large-scale projects, such as the International HapMap Project and 1000 Genomes Project, continued the HGP's work, capturing extensive variation and genomic diversity within humans. Recently, newer initiatives have significantly increased in scale and expanded beyond genomics, offering a more detailed...
        06-25-2024, 06:43 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 07-16-2024, 05:49 AM
      0 responses
      22 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-15-2024, 06:53 AM
      0 responses
      30 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-10-2024, 07:30 AM
      0 responses
      40 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 07-03-2024, 09:45 AM
      0 responses
      205 views
      0 likes
      Last Post seqadmin  
      Working...
      X