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Hello,
i've SNP calling data from whole genome comparisons done through de novo assembly and dHPLC. Now i want to infer some phylogeny on the given SNPs since the species sequenced are somewhat close related. That's no big deal at all, but how many bootstrapping runs one has to do to state it as a significant verified edge? Is there any rule of thumb?
Best,
phil
i've SNP calling data from whole genome comparisons done through de novo assembly and dHPLC. Now i want to infer some phylogeny on the given SNPs since the species sequenced are somewhat close related. That's no big deal at all, but how many bootstrapping runs one has to do to state it as a significant verified edge? Is there any rule of thumb?
Best,
phil