Cufflinks 2.0.0 installation errors

[ATD]

Hello,
I have tried these steps http://seqanswers.com/forums/showthr...?t=4589&page=3.

However, cufflinks 2 installation doesn't work. I tried all 3 verions of Boost 1.47 to 1.49.

We are running RHEL5.4
Linux 2.6.18-194.11.4.el5 #1 SMP Fri Sep 17 04:57:05 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux

The boost configure is

./bjam --prefix=$HOME/local --toolset=gcc architecture=x86 link=static runtime-link=static stage install

The cufflinks configure is
./configure --prefix=$HOME/local --with-boost=$HOME/local --with-bam=$HOME/local --with-eigen=$HOME/local


The error is
libcufflinks.a(assemble.o):/home/atd/local/include/boost/thread/tss.hpp:84: more undefined references to `boost::detail::get_tss_data(void const*)' follow
collect2: ld returned 1 exit status
make[2]: *** [cufflinks] Error 1
make[2]: Leaving directory `/home/atd/tmp/cufflinks-2.0.0/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/atd/tmp/cufflinks-2.0.0'
make: *** [all] Error 2


Please help me.
Thank you.
Andy

[GenoMax]

Is the boost library path correctly set? See this thread for some additional info: http://seqanswers.com/forums/showthread.php?t=19805

[Verbrugghen]

This boost version has some changing and these changes are good for everyone we can now manage the different cases at one time. This version is too much helpful for the book report writing services so that’s why book writers buy this paid version for unlocking all the services.

[samnantha99]

It looks like the issue is related to Boost thread libraries not being properly linked. Errors like undefined references to boost::detail::get_tss_data usually mean that -lboost_thread and -lboost_system are either missing or mismatched with your build (static vs shared).

Since you're building Boost with static linking, make sure Cufflinks is also linking against the same static libraries and that your LD_LIBRARY_PATH or LIBRARY_PATH includes $HOME/local/lib. You might also want to explicitly pass the libraries during configure or edit the Makefile to include:
-lboost_thread -lboost_system -lpthread

Also double-check that the Boost version you compiled matches the compiler used for Cufflinks.

If you're working on this as part of a bioinformatics assignment and need a clearer breakdown of the setup or troubleshooting steps, you can also get help here: https://essaypro.com/do-my-assignment