Hi,
I've used cufflinks for DE analysis among pooled samples of individuals (n=20) to build a transcriptome. There are 3 exposures that have their own run data, but comparison between 2 exposure concentrations using cufflinks has provided p-values.
Refining further analysis by fold change and p-value provides a gene list that makes sense to the system- though we will only use fold change and commonly up/down regulated genes to provide candidates for further analysis.
Where have these p-values come from? Should I just ignore them?
Many thanks!
I've used cufflinks for DE analysis among pooled samples of individuals (n=20) to build a transcriptome. There are 3 exposures that have their own run data, but comparison between 2 exposure concentrations using cufflinks has provided p-values.
Refining further analysis by fold change and p-value provides a gene list that makes sense to the system- though we will only use fold change and commonly up/down regulated genes to provide candidates for further analysis.
Where have these p-values come from? Should I just ignore them?
Many thanks!
