Originally posted by Victory
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Please be more verbose. What commands are you executing to install samtools after copying the SAM folder. You may have to get your cluster administrator to install samtools cluster-wide. I typically have a local install directory that is included in my PATH environmental variable. -
I use the import command to make BAM file.
samtools import <in.ref_list> <in.sam> <out.bam>
Do I have to use specific command to install the SAM program or just put the program folder on the directory?Comment
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You have to copy the binary to an directory where *other* binaries are installed (like /usr/local/bin). You have to make sure that your PATH environment variable includes the above path. Then you can just "samtools" instead of the "/home/<ETC>/samtools"Originally posted by Victory View PostComment
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Thank you. I will try that.Comment
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