How can i know which reads are multiple hit in maq output?
SOLEXA8_20:5:8:387:500/2 LG_I 2333 + 0 32 0 0 0 4 39 0
16 36 aaaccccaaaccctaaaccctgaaccctaaagccac 8888888887888888.888778.887.87+%10)%
SOLEXA8_20:5:89:1317:1949/2 LG_I 10793 + 208 18 10 10 10 3 69 0
0 36 ttttttagtctgttatgctacatgaaatgcaaaatt +++88888888888888888888888888822222/
i want to know which reads are unique mapped , which reads are not unique mapped
SOLEXA8_20:5:8:387:500/2 LG_I 2333 + 0 32 0 0 0 4 39 0
16 36 aaaccccaaaccctaaaccctgaaccctaaagccac 8888888887888888.888778.887.87+%10)%
SOLEXA8_20:5:89:1317:1949/2 LG_I 10793 + 208 18 10 10 10 3 69 0
0 36 ttttttagtctgttatgctacatgaaatgcaaaatt +++88888888888888888888888888822222/
i want to know which reads are unique mapped , which reads are not unique mapped
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