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  • daphnebc
    Junior Member
    • Sep 2011
    • 1
    #1

    Looking for high coverage dataset

    Hi everyone,

    I've been reading and learning for some time from this forum, it assisted me in solving some alignment problems!

    For some time now I'm working with low coverage samples, and as a additional part of my research I would like to use a dataset with a higher coverage. I've used regular sources to look for available datasets (1000genomes ftp, EBI, etc.), but I haven't found what I'm looking for. It could of course be possible that the data is not available, but as I'm often not completely sure of where to look, I'm hoping it is available somewhere.

    Ideally the dataset I'm looking for is similar to the data I currently use (Illumina HiSeq 2000, whole genome sequencing, Single End, Non-cancer human genome sample), with a coverage of 30x or higher.

    Does anyone know where I can find such a dataset? Or can someone point me in the right direction (other databases)?

    Thanks in advance!
    Tags: dataset, high coverage, hiseq 2000, whole genome sequencing
  • Gators
    Member
    • Feb 2011
    • 22
    #2
    SRA database?

    Comment

    • adaptivegenome
      Super Moderator
      • Nov 2009
      • 436
      #3
      1K Genome Project has some nice high coverage genomes.

      Comment

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