Hello All,
I am confused with how to match the "XLOC" to the gene annotation. I could see the most diff. expressed XLOC but i do not know the annotation for them (the XLOC is not really useful, i need the annotation).
I run cufflink doing:
$cufflinks -p 8 -o C1_R1_clout C1_R1_thout/accepted_hits.bam
Should i do :
$cufflinks -p 8 -o -G C1_R1_clout C1_R1_thout/accepted_hits.bam
this G is not added in the original protocol but apparently it should be added?
Please let me know!
many thanks
I am confused with how to match the "XLOC" to the gene annotation. I could see the most diff. expressed XLOC but i do not know the annotation for them (the XLOC is not really useful, i need the annotation).
I run cufflink doing:
$cufflinks -p 8 -o C1_R1_clout C1_R1_thout/accepted_hits.bam
Should i do :
$cufflinks -p 8 -o -G C1_R1_clout C1_R1_thout/accepted_hits.bam
this G is not added in the original protocol but apparently it should be added?
Please let me know!
many thanks
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