hi
I had done some RNAseq analysis using the older (1.5) version of DESeq and obtained differentially expressed genes. I re-run the analysis on the same data using version 1.8.2.
The results are completely different. Nothing (# of genes, Pvalues) is matching with the previous results! Moreover, it is mostly a different "set" of genes. I can not trust the results if they are not reproducible.
Can anyone please help?
I had done some RNAseq analysis using the older (1.5) version of DESeq and obtained differentially expressed genes. I re-run the analysis on the same data using version 1.8.2.
The results are completely different. Nothing (# of genes, Pvalues) is matching with the previous results! Moreover, it is mostly a different "set" of genes. I can not trust the results if they are not reproducible.
Can anyone please help?
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