Hello there,
I am extracting short reads from a .bam file in one specific region using Bioconductor Rsamtools package, the sequence information from scanBam and readBamGappedAlignments are different. Could somebody please tell me what is the difference of scanBam and readBamGappedAlignments? Many thanks!!
I am extracting short reads from a .bam file in one specific region using Bioconductor Rsamtools package, the sequence information from scanBam and readBamGappedAlignments are different. Could somebody please tell me what is the difference of scanBam and readBamGappedAlignments? Many thanks!!
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