samtoafg

[jjjscuedu]

Dear all,

After running SOAP assembly, I am trying to scaffold them using bambus2.

However, when I convert the contig file into afg file, there is an
error like this:

[jjin@fnode1 bambus2]$ /diag/software/metAMOS-1.0b/AMOS/Linux-x86_64/bin/./samtoafg ../oil_palm.contig ../DNA_oil_palm_bowtie.sam > assembly.afg
Died at diag/software/metAMOS-1.0b/AMOS/Linux-x86_64/bin/./samtoafg line 105, <>
line 92495419.


Can anyone give me some suggestions?



Thanks!

Jingjing