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  • Plotting MeDIP-seq vs genes of interest

    I have MeDIP-seq reads for each chromosome and the resolution is 100 bp. My questions is how can I plot read counts vs genes of interests. From USCS browser, I can get location of these genes and their coordinate on the chromosome.
    Take for example data on chr1 looks like this:
    0 20 0 0 35 0 0 ....
    data is recorded after each 100 base pair. But I dont know how to map my read counts to chromosome coordinates. I'm also using matlab.
    I'm new to this field and any help or suggestion will be greatly appreciated !
    Amy-
    Last edited by nilshomer; 06-18-2012, 12:15 PM.

  • #2
    Please make sure that you don't post the same question in two forums.

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