Hi,
I have just run Tophat for the first time and get the following errors.
It still gives me some output files, but I would like to be sure that it did run properly before continuing with the analysis.
[Mon Aug 10 17:43:05 2009] Indexing splices
Warning: Encountered reference sequence with only gaps
Warning: Encountered reference sequence with only gaps
[Mon Aug 10 17:43:27 2009] Mapping reads against segment_juncs with Bowtie
[Mon Aug 10 17:56:42 2009] Mapping reads against segment_juncs with Bowtie
[Mon Aug 10 18:10:02 2009] Joining segment hits
[Mon Aug 10 18:14:24 2009] Mapping reads against HumanRefSeq with Bowtie
[Mon Aug 10 18:31:04 2009] Joining segment hits
*** buffer overflow detected ***: /home/neuro/Documents/Ali/tophat-1.0.10/bin/long_spanning_reads terminated
======= Backtrace: =========
/lib/libc.so.6(__fortify_fail+0x37)[0x7f15666d8887]
/lib/libc.so.6[0x7f15666d6750]
These are the 2 error messages I am concerned with.
Thanks for any help
alig
I have just run Tophat for the first time and get the following errors.
It still gives me some output files, but I would like to be sure that it did run properly before continuing with the analysis.
[Mon Aug 10 17:43:05 2009] Indexing splices
Warning: Encountered reference sequence with only gaps
Warning: Encountered reference sequence with only gaps
[Mon Aug 10 17:43:27 2009] Mapping reads against segment_juncs with Bowtie
[Mon Aug 10 17:56:42 2009] Mapping reads against segment_juncs with Bowtie
[Mon Aug 10 18:10:02 2009] Joining segment hits
[Mon Aug 10 18:14:24 2009] Mapping reads against HumanRefSeq with Bowtie
[Mon Aug 10 18:31:04 2009] Joining segment hits
*** buffer overflow detected ***: /home/neuro/Documents/Ali/tophat-1.0.10/bin/long_spanning_reads terminated
======= Backtrace: =========
/lib/libc.so.6(__fortify_fail+0x37)[0x7f15666d8887]
/lib/libc.so.6[0x7f15666d6750]
These are the 2 error messages I am concerned with.
Thanks for any help
alig
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