How do you "database" your results?

Genomics101

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Join Date: May 2012

Posts: 60
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#1

How do you "database" your results?

06-20-2012, 07:20 AM

Questions:
• How did you make a relational database for you genomic information/analysis results?
• How long did it take you to design and implement?
• Could someone comfortable with programming but without much experience do it, or does it require a pro?

After just a few months of NGS analysis, I am swimming in results: GFF files with all the information/annotations about the reference genomes, VCF files of indels and SNPs, snpEff-annotated VCF results, SMART annotated protein sequence results. But these are all flat files. I believe, at this point, a relational database is needed.
Tags: beginner, databases, newbie, programming
xied75

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Join Date: Feb 2012

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#2

06-20-2012, 07:23 AM

That's a VERY GOOD question indeed. I don't have the answer yet as I'm trying to design one.
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shyam_la

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Join Date: Mar 2012

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#3

06-20-2012, 12:36 PM

I am looking for an answer too..
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tayebwajb

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Join Date: Aug 2010

Posts: 2
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#4

06-23-2012, 04:22 AM

I will need an answer to this question soon!
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