Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • How to deal with the document of SAM

    I am a beginner for NGS. When I made reads mapping, I found a document named SAM. How can I use this document?
    And how could I know where one read mapped? Thank you!

  • #2
    I believe you are asking about SAM file format description. If that is so then you will find the necessary information here: http://samtools.sourceforge.net/SAM1.pdf

    Comment


    • #3
      Originally posted by GenoMax View Post
      I believe you are asking about SAM file format description. If that is so then you will find the necessary information here: http://samtools.sourceforge.net/SAM1.pdf
      Thank you very much. I also want to know when i do reads mapping how can i know where a read mapped? could you give me some helps? Thak you!

      Comment


      • #4


        This provides a good explanation of SAM alignments.

        Originally posted by luckylove View Post
        Thank you very much. I also want to know when i do reads mapping how can i know where a read mapped? could you give me some helps? Thak you!

        Comment


        • #5
          Originally posted by GenoMax View Post
          http://genome.sph.umich.edu/wiki/SAM

          This provides a good explanation of SAM alignments.
          ok, thank you very much!

          Comment

          Latest Articles

          Collapse

          • seqadmin
            Essential Discoveries and Tools in Epitranscriptomics
            by seqadmin




            The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
            Yesterday, 07:01 AM
          • seqadmin
            Current Approaches to Protein Sequencing
            by seqadmin


            Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
            04-04-2024, 04:25 PM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by seqadmin, 04-11-2024, 12:08 PM
          0 responses
          57 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 04-10-2024, 10:19 PM
          0 responses
          53 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 04-10-2024, 09:21 AM
          0 responses
          45 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 04-04-2024, 09:00 AM
          0 responses
          55 views
          0 likes
          Last Post seqadmin  
          Working...
          X