Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    aggregate read cycle info from bam files

    Hi Everyone:

    I am trying to obtain this plot from some SNPs of my samples. You can see the plot in 8.52 of this video (R.Irizarry group) :
    - YouTube
    http://www.youtube.com/watch?v=eXkjlopwIH4
    Enjoy the videos and music you love, upload original content, and share it all with friends, family, and the world on YouTube.

    Basically, I need to know the cycle of each aligned read in a given position. I am thinking in indirect solutions ( I am using Illumina reads, 90bp ) but I was wondering if anyone have done these plots, or know some tool to directly extract this information ( in principle from a Bam File ).

    Thank you very much
    Oriol
    Tags: bam, cycle, illumina, read, tools
Previous template Next

Latest Articles

Collapse
  • seqadmin
    Genetic Variation in Immunogenetics and Antibody Diversity
    by seqadmin



    The field of immunogenetics explores how genetic variations influence immune responses and susceptibility to disease. In a recent SEQanswers webinar, Oscar Rodriguez, Ph.D., Postdoctoral Researcher at the University of Louisville, and Ruben Martínez Barricarte, Ph.D., Assistant Professor of Medicine at Vanderbilt University, shared recent advancements in immunogenetics. This article discusses their research on genetic variation in antibody loci, antibody production processes,...
    11-06-2024, 07:24 PM
  • seqadmin
    Choosing Between NGS and qPCR
    by seqadmin



    Next-generation sequencing (NGS) and quantitative polymerase chain reaction (qPCR) are essential techniques for investigating the genome, transcriptome, and epigenome. In many cases, choosing the appropriate technique is straightforward, but in others, it can be more challenging to determine the most effective option. A simple distinction is that smaller, more focused projects are typically better suited for qPCR, while larger, more complex datasets benefit from NGS. However,...
    10-18-2024, 07:11 AM
View All

ad_right_rmr

Collapse

News

Collapse
Topics Statistics Last Post
ASHG 2024 Highlights – Part Two by seqadmin
Started by seqadmin, Today, 11:09 AM
0 responses
24 views
0 likes
 Last Post seqadmin
by seqadmin
Today, 11:09 AM  
ASHG 2024 Highlights – Part One by seqadmin
Started by seqadmin, Today, 06:13 AM
0 responses
20 views
0 likes
 Last Post seqadmin
by seqadmin
Today, 06:13 AM  
Seq-Scope Expands Possibilities for High-Resolution Gene Expression Analysis by seqadmin
Started by seqadmin, 11-01-2024, 06:09 AM
0 responses
30 views
0 likes
 Last Post seqadmin
by seqadmin
11-01-2024, 06:09 AM  
New Model Aims to Explain Polygenic Diseases by Connecting Genomic Mutations and Regulatory Networks by seqadmin
Started by seqadmin, 10-30-2024, 05:31 AM
0 responses
21 views
0 likes
 Last Post seqadmin
by seqadmin
10-30-2024, 05:31 AM  
View All
Working...
X