Tweet
Dear All
I am using DAVID to do the pathway and GO analysis. My selected differentially expressed gene IDs are as follows: POPTR_0002s23610, PopTR_0014s19710, which are from the Populus trichocarpa genome v2.0 on Phytozyme website.
The DAVID software supplies a list of types of gene ID, such as:
Gene ID Type Supported in DAVID
AFFY_ID
ENSEMBL
ENTREZ_GENE_ID
FLYBASE_ID
GENBANK_ACCESSION
GENEBANK_ID
GENPEPT_ACCESSION
HAMAP_ID
HSSP_ID
Illumina
NOT SURE
OFFICIAL_GENE_SYMBOL
PIR_ACCESSION
PIR_ID
PIR_NREF_ID
REFSEQ_GENOMIC
REFSEQ_MRNA
REFSEQ_PROTEIN
REFSEQ_RNA
RGD_ID
TIGR_ID
UNIGENE
UNIPROT_ACCESSION
UNIPROT_ID
UNIREF100_ID
WORMBASE_ID
I tried to choose NOTSURE, but it didnot help to find the right gene ID type.
Is anyone familiar with the geneID type I provided? I will appreciate any comments.
Li
I am using DAVID to do the pathway and GO analysis. My selected differentially expressed gene IDs are as follows: POPTR_0002s23610, PopTR_0014s19710, which are from the Populus trichocarpa genome v2.0 on Phytozyme website.
The DAVID software supplies a list of types of gene ID, such as:
Gene ID Type Supported in DAVID
AFFY_ID
ENSEMBL
ENTREZ_GENE_ID
FLYBASE_ID
GENBANK_ACCESSION
GENEBANK_ID
GENPEPT_ACCESSION
HAMAP_ID
HSSP_ID
Illumina
NOT SURE
OFFICIAL_GENE_SYMBOL
PIR_ACCESSION
PIR_ID
PIR_NREF_ID
REFSEQ_GENOMIC
REFSEQ_MRNA
REFSEQ_PROTEIN
REFSEQ_RNA
RGD_ID
TIGR_ID
UNIGENE
UNIPROT_ACCESSION
UNIPROT_ID
UNIREF100_ID
WORMBASE_ID
I tried to choose NOTSURE, but it didnot help to find the right gene ID type.
Is anyone familiar with the geneID type I provided? I will appreciate any comments.
Li