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  • Adam Taranto
    Junior Member
    • Sep 2014
    • 2
    #16
    Originally posted by JChase View Post
    Does anyone have any suggestions as to how to deal with this? Considering that only a single one of the BAM files is missing a header, I'm hoping there is some way to repair it, using the same header found in all the other BAM files. Does anyone know if this is possible? I've tried using samtools reheader tool, but that for some odd reason sends what seems like millions of lines of weird symbols through my terminal (eventually crashing it) and doesn't end up changing the file at all.
    Hi JChase,

    Did you ever figure out how to fix the missing header? or was the error resolved by re-running the step?

    Adam

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      • JChase
        Member
        • Jun 2012
        • 17
        #17
        Originally posted by Adam Taranto View Post
        Hi JChase,

        Did you ever figure out how to fix the missing header? or was the error resolved by re-running the step?

        Adam
        See post 12: I had to re-run without multithreading. However, I haven't tested to see if multithreading has been fixed since this original post.

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